scRNA-seq
UMI
Mitochondrial content
UMI vs mitochondrial contents
version 1
version 2
version 3
Number of cells with UMI & mitochondrial content cutoff
nCount_RNA >= 500 & percent.mt <= 25
nCount_RNA >= 1000 & percent.mt <= 25
nCount_RNA >= 500 & percent.mt <= 10
nCount_RNA >= 1000 & percent.mt <= 10
Sung Rye Park
2024-05-11
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scRNA-seq
QC
Number of total cells
## [1] 19982
Number of cells in each condition
UMI
Mitochondrial content
UMI vs mitochondrial contents
version 1
version 2
version 3
Number of cells with UMI & mitochondrial content cutoff
nCount_RNA >= 500 & percent.mt <= 25
nCount_RNA >= 1000 & percent.mt <= 25
nCount_RNA >= 500 & percent.mt <= 10
nCount_RNA >= 1000 & percent.mt <= 10
